Serveur d'exploration sur la génomique des pucciniales

Attention, ce site est en cours de développement !
Attention, site généré par des moyens informatiques à partir de corpus bruts.
Les informations ne sont donc pas validées.

Genome-Wide Analysis of the PIN Auxin Efflux Carrier Gene Family in Coffee.

Identifieur interne : 000033 ( Main/Exploration ); précédent : 000032; suivant : 000034

Genome-Wide Analysis of the PIN Auxin Efflux Carrier Gene Family in Coffee.

Auteurs : Xing Huang [République populaire de Chine] ; Xuehui Bai [République populaire de Chine] ; Tieying Guo [République populaire de Chine] ; Zhouli Xie [République populaire de Chine] ; Margit Laimer [Autriche] ; Dengxiang Du [République populaire de Chine] ; Thomas Gbokie [République populaire de Chine] ; Zhirun Zhang [République populaire de Chine] ; Chunping He [République populaire de Chine] ; Ying Lu [République populaire de Chine] ; Weihuai Wu [République populaire de Chine] ; Kexian Yi [République populaire de Chine]

Source :

RBID : pubmed:32825074

Abstract

Coffee is one of the most popular beverages around the world, which is mainly produced from the allopolyploid Coffea arabica. The genomes of C. arabica and its two ancestors C. canephora and C. eugenioides have been released due to the development of next generation sequencing. However, few studies on C. arabica are related to the PIN-FORMED (PIN) auxin efflux transporter despite its importance in auxin-mediated plant growth and development. In the present study, we conducted a genome-wide analysis of the PIN gene family in the three coffee species. Totals of 17, 9 and 10 of the PIN members were characterized in C. Arabica, C. canephora and C. eugenioides, respectively. Phylogenetic analysis revealed gene loss of PIN1 and PIN2 homologs in C. arabica, as well as gene duplication of PIN5 homologs during the fractionation process after tetraploidy. Furthermore, we conducted expression analysis of PIN genes in C. arabica by in silico and qRT-PCR. The results revealed the existence of gene expression dominance in allopolyploid coffee and illustrated several PIN candidates in regulating auxin transport and homeostasis under leaf rust fungus inoculation and the tissue-specific expression pattern of C. arabica. Together, this study provides the basis and guideline for future functional characterization of the PIN gene family.

DOI: 10.3390/plants9091061
PubMed: 32825074
PubMed Central: PMC7570243


Affiliations:


Links toward previous steps (curation, corpus...)


Le document en format XML

<record>
<TEI>
<teiHeader>
<fileDesc>
<titleStmt>
<title xml:lang="en">Genome-Wide Analysis of the PIN Auxin Efflux Carrier Gene Family in Coffee.</title>
<author>
<name sortKey="Huang, Xing" sort="Huang, Xing" uniqKey="Huang X" first="Xing" last="Huang">Xing Huang</name>
<affiliation wicri:level="1">
<nlm:affiliation>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101</wicri:regionArea>
<wicri:noRegion>Haikou 571101</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1">
<nlm:affiliation>Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture and Rural Affairs, Haikou 571101, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture and Rural Affairs, Haikou 571101</wicri:regionArea>
<wicri:noRegion>Haikou 571101</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1">
<nlm:affiliation>Hainan Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou 571101, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Hainan Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou 571101</wicri:regionArea>
<wicri:noRegion>Haikou 571101</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Bai, Xuehui" sort="Bai, Xuehui" uniqKey="Bai X" first="Xuehui" last="Bai">Xuehui Bai</name>
<affiliation wicri:level="1">
<nlm:affiliation>Dehong Tropical Agriculture Research Institute of Yunnan, Ruili 678600, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Dehong Tropical Agriculture Research Institute of Yunnan, Ruili 678600</wicri:regionArea>
<wicri:noRegion>Ruili 678600</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Guo, Tieying" sort="Guo, Tieying" uniqKey="Guo T" first="Tieying" last="Guo">Tieying Guo</name>
<affiliation wicri:level="1">
<nlm:affiliation>Dehong Tropical Agriculture Research Institute of Yunnan, Ruili 678600, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Dehong Tropical Agriculture Research Institute of Yunnan, Ruili 678600</wicri:regionArea>
<wicri:noRegion>Ruili 678600</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Xie, Zhouli" sort="Xie, Zhouli" uniqKey="Xie Z" first="Zhouli" last="Xie">Zhouli Xie</name>
<affiliation wicri:level="4">
<nlm:affiliation>School of Life Sciences, Peking University, Beijing 100871, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>School of Life Sciences, Peking University, Beijing 100871</wicri:regionArea>
<placeName>
<settlement type="city">Pékin</settlement>
</placeName>
<orgName type="university">Université de Pékin</orgName>
<placeName>
<settlement type="city">Pékin</settlement>
<region type="capitale">Pékin</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Laimer, Margit" sort="Laimer, Margit" uniqKey="Laimer M" first="Margit" last="Laimer">Margit Laimer</name>
<affiliation wicri:level="1">
<nlm:affiliation>Plant Biotechnology Unit, Department of Biotechnology, BOKU-VIBT, University of Natural Resources and Life Sciences, Vienna 1190, Austria.</nlm:affiliation>
<country xml:lang="fr">Autriche</country>
<wicri:regionArea>Plant Biotechnology Unit, Department of Biotechnology, BOKU-VIBT, University of Natural Resources and Life Sciences, Vienna 1190</wicri:regionArea>
<placeName>
<settlement type="city">Vienne (Autriche)</settlement>
<region nuts="2" type="province">Vienne (Autriche)</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Du, Dengxiang" sort="Du, Dengxiang" uniqKey="Du D" first="Dengxiang" last="Du">Dengxiang Du</name>
<affiliation wicri:level="1">
<nlm:affiliation>National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070</wicri:regionArea>
<placeName>
<settlement type="city">Wuhan</settlement>
<region type="région">Hubei</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Gbokie, Thomas" sort="Gbokie, Thomas" uniqKey="Gbokie T" first="Thomas" last="Gbokie">Thomas Gbokie</name>
<affiliation wicri:level="1">
<nlm:affiliation>College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>College of Plant Protection, Nanjing Agricultural University, Nanjing 210095</wicri:regionArea>
<wicri:noRegion>Nanjing 210095</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Zhang, Zhirun" sort="Zhang, Zhirun" uniqKey="Zhang Z" first="Zhirun" last="Zhang">Zhirun Zhang</name>
<affiliation wicri:level="1">
<nlm:affiliation>Coffee Engineering Research Center of China, Mangshi 678400, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Coffee Engineering Research Center of China, Mangshi 678400</wicri:regionArea>
<wicri:noRegion>Mangshi 678400</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="He, Chunping" sort="He, Chunping" uniqKey="He C" first="Chunping" last="He">Chunping He</name>
<affiliation wicri:level="1">
<nlm:affiliation>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101</wicri:regionArea>
<wicri:noRegion>Haikou 571101</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1">
<nlm:affiliation>Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture and Rural Affairs, Haikou 571101, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture and Rural Affairs, Haikou 571101</wicri:regionArea>
<wicri:noRegion>Haikou 571101</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1">
<nlm:affiliation>Hainan Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou 571101, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Hainan Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou 571101</wicri:regionArea>
<wicri:noRegion>Haikou 571101</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Lu, Ying" sort="Lu, Ying" uniqKey="Lu Y" first="Ying" last="Lu">Ying Lu</name>
<affiliation wicri:level="1">
<nlm:affiliation>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101</wicri:regionArea>
<wicri:noRegion>Haikou 571101</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1">
<nlm:affiliation>Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture and Rural Affairs, Haikou 571101, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture and Rural Affairs, Haikou 571101</wicri:regionArea>
<wicri:noRegion>Haikou 571101</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1">
<nlm:affiliation>Hainan Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou 571101, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Hainan Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou 571101</wicri:regionArea>
<wicri:noRegion>Haikou 571101</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Wu, Weihuai" sort="Wu, Weihuai" uniqKey="Wu W" first="Weihuai" last="Wu">Weihuai Wu</name>
<affiliation wicri:level="1">
<nlm:affiliation>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101</wicri:regionArea>
<wicri:noRegion>Haikou 571101</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1">
<nlm:affiliation>Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture and Rural Affairs, Haikou 571101, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture and Rural Affairs, Haikou 571101</wicri:regionArea>
<wicri:noRegion>Haikou 571101</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1">
<nlm:affiliation>Hainan Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou 571101, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Hainan Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou 571101</wicri:regionArea>
<wicri:noRegion>Haikou 571101</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Yi, Kexian" sort="Yi, Kexian" uniqKey="Yi K" first="Kexian" last="Yi">Kexian Yi</name>
<affiliation wicri:level="1">
<nlm:affiliation>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101</wicri:regionArea>
<wicri:noRegion>Haikou 571101</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1">
<nlm:affiliation>Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture and Rural Affairs, Haikou 571101, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture and Rural Affairs, Haikou 571101</wicri:regionArea>
<wicri:noRegion>Haikou 571101</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1">
<nlm:affiliation>Hainan Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou 571101, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Hainan Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou 571101</wicri:regionArea>
<wicri:noRegion>Haikou 571101</wicri:noRegion>
</affiliation>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">PubMed</idno>
<date when="2020">2020</date>
<idno type="RBID">pubmed:32825074</idno>
<idno type="pmid">32825074</idno>
<idno type="doi">10.3390/plants9091061</idno>
<idno type="pmc">PMC7570243</idno>
<idno type="wicri:Area/Main/Corpus">000008</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000008</idno>
<idno type="wicri:Area/Main/Curation">000008</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000008</idno>
<idno type="wicri:Area/Main/Exploration">000008</idno>
</publicationStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title xml:lang="en">Genome-Wide Analysis of the PIN Auxin Efflux Carrier Gene Family in Coffee.</title>
<author>
<name sortKey="Huang, Xing" sort="Huang, Xing" uniqKey="Huang X" first="Xing" last="Huang">Xing Huang</name>
<affiliation wicri:level="1">
<nlm:affiliation>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101</wicri:regionArea>
<wicri:noRegion>Haikou 571101</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1">
<nlm:affiliation>Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture and Rural Affairs, Haikou 571101, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture and Rural Affairs, Haikou 571101</wicri:regionArea>
<wicri:noRegion>Haikou 571101</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1">
<nlm:affiliation>Hainan Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou 571101, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Hainan Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou 571101</wicri:regionArea>
<wicri:noRegion>Haikou 571101</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Bai, Xuehui" sort="Bai, Xuehui" uniqKey="Bai X" first="Xuehui" last="Bai">Xuehui Bai</name>
<affiliation wicri:level="1">
<nlm:affiliation>Dehong Tropical Agriculture Research Institute of Yunnan, Ruili 678600, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Dehong Tropical Agriculture Research Institute of Yunnan, Ruili 678600</wicri:regionArea>
<wicri:noRegion>Ruili 678600</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Guo, Tieying" sort="Guo, Tieying" uniqKey="Guo T" first="Tieying" last="Guo">Tieying Guo</name>
<affiliation wicri:level="1">
<nlm:affiliation>Dehong Tropical Agriculture Research Institute of Yunnan, Ruili 678600, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Dehong Tropical Agriculture Research Institute of Yunnan, Ruili 678600</wicri:regionArea>
<wicri:noRegion>Ruili 678600</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Xie, Zhouli" sort="Xie, Zhouli" uniqKey="Xie Z" first="Zhouli" last="Xie">Zhouli Xie</name>
<affiliation wicri:level="4">
<nlm:affiliation>School of Life Sciences, Peking University, Beijing 100871, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>School of Life Sciences, Peking University, Beijing 100871</wicri:regionArea>
<placeName>
<settlement type="city">Pékin</settlement>
</placeName>
<orgName type="university">Université de Pékin</orgName>
<placeName>
<settlement type="city">Pékin</settlement>
<region type="capitale">Pékin</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Laimer, Margit" sort="Laimer, Margit" uniqKey="Laimer M" first="Margit" last="Laimer">Margit Laimer</name>
<affiliation wicri:level="1">
<nlm:affiliation>Plant Biotechnology Unit, Department of Biotechnology, BOKU-VIBT, University of Natural Resources and Life Sciences, Vienna 1190, Austria.</nlm:affiliation>
<country xml:lang="fr">Autriche</country>
<wicri:regionArea>Plant Biotechnology Unit, Department of Biotechnology, BOKU-VIBT, University of Natural Resources and Life Sciences, Vienna 1190</wicri:regionArea>
<placeName>
<settlement type="city">Vienne (Autriche)</settlement>
<region nuts="2" type="province">Vienne (Autriche)</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Du, Dengxiang" sort="Du, Dengxiang" uniqKey="Du D" first="Dengxiang" last="Du">Dengxiang Du</name>
<affiliation wicri:level="1">
<nlm:affiliation>National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070</wicri:regionArea>
<placeName>
<settlement type="city">Wuhan</settlement>
<region type="région">Hubei</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Gbokie, Thomas" sort="Gbokie, Thomas" uniqKey="Gbokie T" first="Thomas" last="Gbokie">Thomas Gbokie</name>
<affiliation wicri:level="1">
<nlm:affiliation>College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>College of Plant Protection, Nanjing Agricultural University, Nanjing 210095</wicri:regionArea>
<wicri:noRegion>Nanjing 210095</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Zhang, Zhirun" sort="Zhang, Zhirun" uniqKey="Zhang Z" first="Zhirun" last="Zhang">Zhirun Zhang</name>
<affiliation wicri:level="1">
<nlm:affiliation>Coffee Engineering Research Center of China, Mangshi 678400, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Coffee Engineering Research Center of China, Mangshi 678400</wicri:regionArea>
<wicri:noRegion>Mangshi 678400</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="He, Chunping" sort="He, Chunping" uniqKey="He C" first="Chunping" last="He">Chunping He</name>
<affiliation wicri:level="1">
<nlm:affiliation>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101</wicri:regionArea>
<wicri:noRegion>Haikou 571101</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1">
<nlm:affiliation>Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture and Rural Affairs, Haikou 571101, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture and Rural Affairs, Haikou 571101</wicri:regionArea>
<wicri:noRegion>Haikou 571101</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1">
<nlm:affiliation>Hainan Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou 571101, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Hainan Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou 571101</wicri:regionArea>
<wicri:noRegion>Haikou 571101</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Lu, Ying" sort="Lu, Ying" uniqKey="Lu Y" first="Ying" last="Lu">Ying Lu</name>
<affiliation wicri:level="1">
<nlm:affiliation>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101</wicri:regionArea>
<wicri:noRegion>Haikou 571101</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1">
<nlm:affiliation>Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture and Rural Affairs, Haikou 571101, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture and Rural Affairs, Haikou 571101</wicri:regionArea>
<wicri:noRegion>Haikou 571101</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1">
<nlm:affiliation>Hainan Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou 571101, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Hainan Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou 571101</wicri:regionArea>
<wicri:noRegion>Haikou 571101</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Wu, Weihuai" sort="Wu, Weihuai" uniqKey="Wu W" first="Weihuai" last="Wu">Weihuai Wu</name>
<affiliation wicri:level="1">
<nlm:affiliation>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101</wicri:regionArea>
<wicri:noRegion>Haikou 571101</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1">
<nlm:affiliation>Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture and Rural Affairs, Haikou 571101, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture and Rural Affairs, Haikou 571101</wicri:regionArea>
<wicri:noRegion>Haikou 571101</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1">
<nlm:affiliation>Hainan Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou 571101, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Hainan Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou 571101</wicri:regionArea>
<wicri:noRegion>Haikou 571101</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Yi, Kexian" sort="Yi, Kexian" uniqKey="Yi K" first="Kexian" last="Yi">Kexian Yi</name>
<affiliation wicri:level="1">
<nlm:affiliation>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101</wicri:regionArea>
<wicri:noRegion>Haikou 571101</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1">
<nlm:affiliation>Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture and Rural Affairs, Haikou 571101, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture and Rural Affairs, Haikou 571101</wicri:regionArea>
<wicri:noRegion>Haikou 571101</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1">
<nlm:affiliation>Hainan Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou 571101, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Hainan Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou 571101</wicri:regionArea>
<wicri:noRegion>Haikou 571101</wicri:noRegion>
</affiliation>
</author>
</analytic>
<series>
<title level="j">Plants (Basel, Switzerland)</title>
<idno type="ISSN">2223-7747</idno>
<imprint>
<date when="2020" type="published">2020</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc>
<textClass></textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">Coffee is one of the most popular beverages around the world, which is mainly produced from the allopolyploid
<i>Coffea arabica</i>
. The genomes of
<i>C. arabica</i>
and its two ancestors
<i>C. canephora</i>
and
<i>C. eugenioides</i>
have been released due to the development of next generation sequencing. However, few studies on
<i>C. arabica</i>
are related to the PIN-FORMED (PIN) auxin efflux transporter despite its importance in auxin-mediated plant growth and development. In the present study, we conducted a genome-wide analysis of the PIN gene family in the three coffee species. Totals of 17, 9 and 10 of the PIN members were characterized in
<i>C. Arabica</i>
,
<i>C. canephora</i>
and
<i>C. eugenioides</i>
, respectively. Phylogenetic analysis revealed gene loss of PIN1 and PIN2 homologs in
<i>C. arabica</i>
, as well as gene duplication of PIN5 homologs during the fractionation process after tetraploidy. Furthermore, we conducted expression analysis of
<i>PIN</i>
genes in
<i>C. arabica</i>
by in silico and qRT-PCR. The results revealed the existence of gene expression dominance in allopolyploid coffee and illustrated several PIN candidates in regulating auxin transport and homeostasis under leaf rust fungus inoculation and the tissue-specific expression pattern of
<i>C. arabica</i>
. Together, this study provides the basis and guideline for future functional characterization of the PIN gene family.</div>
</front>
</TEI>
<pubmed>
<MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM">
<PMID Version="1">32825074</PMID>
<DateRevised>
<Year>2020</Year>
<Month>10</Month>
<Day>29</Day>
</DateRevised>
<Article PubModel="Electronic">
<Journal>
<ISSN IssnType="Print">2223-7747</ISSN>
<JournalIssue CitedMedium="Print">
<Volume>9</Volume>
<Issue>9</Issue>
<PubDate>
<Year>2020</Year>
<Month>Aug</Month>
<Day>19</Day>
</PubDate>
</JournalIssue>
<Title>Plants (Basel, Switzerland)</Title>
<ISOAbbreviation>Plants (Basel)</ISOAbbreviation>
</Journal>
<ArticleTitle>Genome-Wide Analysis of the PIN Auxin Efflux Carrier Gene Family in Coffee.</ArticleTitle>
<ELocationID EIdType="pii" ValidYN="Y">E1061</ELocationID>
<ELocationID EIdType="doi" ValidYN="Y">10.3390/plants9091061</ELocationID>
<Abstract>
<AbstractText>Coffee is one of the most popular beverages around the world, which is mainly produced from the allopolyploid
<i>Coffea arabica</i>
. The genomes of
<i>C. arabica</i>
and its two ancestors
<i>C. canephora</i>
and
<i>C. eugenioides</i>
have been released due to the development of next generation sequencing. However, few studies on
<i>C. arabica</i>
are related to the PIN-FORMED (PIN) auxin efflux transporter despite its importance in auxin-mediated plant growth and development. In the present study, we conducted a genome-wide analysis of the PIN gene family in the three coffee species. Totals of 17, 9 and 10 of the PIN members were characterized in
<i>C. Arabica</i>
,
<i>C. canephora</i>
and
<i>C. eugenioides</i>
, respectively. Phylogenetic analysis revealed gene loss of PIN1 and PIN2 homologs in
<i>C. arabica</i>
, as well as gene duplication of PIN5 homologs during the fractionation process after tetraploidy. Furthermore, we conducted expression analysis of
<i>PIN</i>
genes in
<i>C. arabica</i>
by in silico and qRT-PCR. The results revealed the existence of gene expression dominance in allopolyploid coffee and illustrated several PIN candidates in regulating auxin transport and homeostasis under leaf rust fungus inoculation and the tissue-specific expression pattern of
<i>C. arabica</i>
. Together, this study provides the basis and guideline for future functional characterization of the PIN gene family.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y">
<Author ValidYN="Y">
<LastName>Huang</LastName>
<ForeName>Xing</ForeName>
<Initials>X</Initials>
<Identifier Source="ORCID">0000-0003-3950-0080</Identifier>
<AffiliationInfo>
<Affiliation>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture and Rural Affairs, Haikou 571101, China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>Hainan Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou 571101, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Bai</LastName>
<ForeName>Xuehui</ForeName>
<Initials>X</Initials>
<AffiliationInfo>
<Affiliation>Dehong Tropical Agriculture Research Institute of Yunnan, Ruili 678600, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Guo</LastName>
<ForeName>Tieying</ForeName>
<Initials>T</Initials>
<AffiliationInfo>
<Affiliation>Dehong Tropical Agriculture Research Institute of Yunnan, Ruili 678600, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Xie</LastName>
<ForeName>Zhouli</ForeName>
<Initials>Z</Initials>
<AffiliationInfo>
<Affiliation>School of Life Sciences, Peking University, Beijing 100871, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Laimer</LastName>
<ForeName>Margit</ForeName>
<Initials>M</Initials>
<AffiliationInfo>
<Affiliation>Plant Biotechnology Unit, Department of Biotechnology, BOKU-VIBT, University of Natural Resources and Life Sciences, Vienna 1190, Austria.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Du</LastName>
<ForeName>Dengxiang</ForeName>
<Initials>D</Initials>
<AffiliationInfo>
<Affiliation>National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Gbokie</LastName>
<ForeName>Thomas</ForeName>
<Initials>T</Initials>
<Suffix>Jr</Suffix>
<Identifier Source="ORCID">0000-0002-8750-824X</Identifier>
<AffiliationInfo>
<Affiliation>College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Zhang</LastName>
<ForeName>Zhirun</ForeName>
<Initials>Z</Initials>
<AffiliationInfo>
<Affiliation>Coffee Engineering Research Center of China, Mangshi 678400, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>He</LastName>
<ForeName>Chunping</ForeName>
<Initials>C</Initials>
<AffiliationInfo>
<Affiliation>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture and Rural Affairs, Haikou 571101, China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>Hainan Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou 571101, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Lu</LastName>
<ForeName>Ying</ForeName>
<Initials>Y</Initials>
<AffiliationInfo>
<Affiliation>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture and Rural Affairs, Haikou 571101, China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>Hainan Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou 571101, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Wu</LastName>
<ForeName>Weihuai</ForeName>
<Initials>W</Initials>
<AffiliationInfo>
<Affiliation>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture and Rural Affairs, Haikou 571101, China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>Hainan Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou 571101, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Yi</LastName>
<ForeName>Kexian</ForeName>
<Initials>K</Initials>
<AffiliationInfo>
<Affiliation>Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture and Rural Affairs, Haikou 571101, China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>Hainan Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haikou 571101, China.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<GrantList CompleteYN="Y">
<Grant>
<GrantID>2018YFD0201100</GrantID>
<Agency>National Key R&D Program of China</Agency>
<Country></Country>
</Grant>
<Grant>
<GrantID>20380</GrantID>
<Agency>FAO/IAEA Collaborative Research Project</Agency>
<Country></Country>
</Grant>
<Grant>
<GrantID>1630042017021</GrantID>
<Agency>Central Public-interest Scientific Institution Basal Research Fund for Chinese Academy of Tropical Agricultural Sciences</Agency>
<Country></Country>
</Grant>
<Grant>
<GrantID>BARTP-08</GrantID>
<Agency>the earmarked fund for the Belt and Road Tropical Project</Agency>
<Country></Country>
</Grant>
<Grant>
<GrantID>201903260016</GrantID>
<Agency>China Scholarship Council</Agency>
<Country></Country>
</Grant>
</GrantList>
<PublicationTypeList>
<PublicationType UI="D016428">Journal Article</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic">
<Year>2020</Year>
<Month>08</Month>
<Day>19</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo>
<Country>Switzerland</Country>
<MedlineTA>Plants (Basel)</MedlineTA>
<NlmUniqueID>101596181</NlmUniqueID>
<ISSNLinking>2223-7747</ISSNLinking>
</MedlineJournalInfo>
<KeywordList Owner="NOTNLM">
<Keyword MajorTopicYN="N">Coffea arabica</Keyword>
<Keyword MajorTopicYN="N">Coffea canephora</Keyword>
<Keyword MajorTopicYN="N">Coffea eugenioides</Keyword>
<Keyword MajorTopicYN="N">PIN</Keyword>
<Keyword MajorTopicYN="N">auxin efflux carrier</Keyword>
<Keyword MajorTopicYN="N">expression</Keyword>
<Keyword MajorTopicYN="N">phylogeny</Keyword>
</KeywordList>
</MedlineCitation>
<PubmedData>
<History>
<PubMedPubDate PubStatus="received">
<Year>2020</Year>
<Month>07</Month>
<Day>17</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="revised">
<Year>2020</Year>
<Month>08</Month>
<Day>18</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted">
<Year>2020</Year>
<Month>08</Month>
<Day>18</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez">
<Year>2020</Year>
<Month>8</Month>
<Day>23</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed">
<Year>2020</Year>
<Month>8</Month>
<Day>23</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline">
<Year>2020</Year>
<Month>8</Month>
<Day>23</Day>
<Hour>6</Hour>
<Minute>1</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>epublish</PublicationStatus>
<ArticleIdList>
<ArticleId IdType="pubmed">32825074</ArticleId>
<ArticleId IdType="pii">plants9091061</ArticleId>
<ArticleId IdType="doi">10.3390/plants9091061</ArticleId>
<ArticleId IdType="pmc">PMC7570243</ArticleId>
</ArticleIdList>
<ReferenceList>
<Reference>
<Citation>Front Plant Sci. 2015 Oct 06;6:767</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">26500658</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Genome. 2018 Feb;61(2):121-130</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">29304291</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>New Phytol. 2016 Jul;211(1):65-74</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">27240710</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Int J Mol Sci. 2018 Apr 19;19(4):</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">29671782</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>BMC Bioinformatics. 2011 Aug 04;12:323</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21816040</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Mol Biol. 2001 Jan 19;305(3):567-80</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">11152613</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Commun. 2016 Jan 21;7:10430</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">26791759</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Mol Biol. 1990 Oct 5;215(3):403-10</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">2231712</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Physiol Plant. 2017 Jun;160(2):222-239</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">28128458</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Int J Mol Sci. 2016 Jul 25;17(8):</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">27463709</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Dev Biol. 2012 Sep 1;369(1):19-31</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22687750</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Int J Mol Sci. 2019 Jul 03;20(13):</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">31277248</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Plant J. 2012 Sep;71(5):860-70</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22540348</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>FEBS J. 2010 Jul;277(14):2954-69</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20528920</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Proteins. 2006 Aug 15;64(3):643-51</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16752418</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Development. 2014 May;141(9):1894-905</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24757006</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Plant J. 2011 Jul;67(2):305-17</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21457367</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Development. 2005 Oct;132(20):4521-31</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16192309</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Front Plant Sci. 2012 Feb 08;3:16</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22639639</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>New Phytol. 2018 May;218(3):1061-1075</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">29465754</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Bioinformatics. 2009 Jun 1;25(11):1451-2</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">19346325</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS Biol. 2018 Aug 27;16(8):e2006062</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">30148831</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Exp Bot. 2014 Jun;65(9):2437-48</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24663343</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Commun. 2012 Jul 03;3:941</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22760640</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Cell. 2009 Mar 20;136(6):1172, 1172.e1</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">19303857</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Development. 2010 Feb;137(4):607-17</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20110326</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>BMC Genomics. 2017 Jul 3;18(1):507</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">28673242</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS Biol. 2010 Jun 29;8(6):e1000409</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20613864</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Mol Plant. 2020 Aug 3;13(8):1194-1202</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">32585190</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Int J Genomics. 2018 Nov 22;2018:5716518</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">30596084</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Cold Spring Harb Perspect Biol. 2015 Oct 28;7(12):</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">26511629</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Genome Biol. 2009;10(12):249</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20053306</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nucleic Acids Res. 2012 Aug;40(15):e115</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22730293</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Plant J. 2018 Feb;93(4):614-636</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">29266460</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Genome Res. 2006 Jul;16(7):934-46</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16760422</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Plant Cell. 1991 Jul;3(7):677-684</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">12324609</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Plant Cell. 2015 Jan;27(1):20-32</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25604445</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nature. 2009 Jun 25;459(7250):1136-40</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">19506555</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS One. 2013 Jul 29;8(7):e70069</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23922907</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Trends Plant Sci. 2018 May;23(5):393-402</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">29433919</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Plant Cell. 2010 Jun;22(6):1762-76</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20562236</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Plant Cell. 2013 May;25(5):1592-608</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23673979</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Cell. 2002 Mar 8;108(5):661-73</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">11893337</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Int J Mol Sci. 2018 Sep 14;19(9):</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">30223430</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Plants (Basel). 2020 Mar 10;9(3):</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">32164258</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Methods. 2001 Dec;25(4):402-8</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">11846609</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Plant Physiol. 2012 Oct;160(2):763-76</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22843667</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Curr Opin Plant Biol. 2016 Apr;30:70-7</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">26896588</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Commun. 2015 Nov 18;6:8821</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">26578065</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>BMC Genomics. 2015 Nov 16;16:951</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">26572792</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nucleic Acids Res. 2002 Jan 1;30(1):325-7</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">11752327</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Mol Biol Evol. 2016 Jul;33(7):1870-4</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">27004904</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Curr Biol. 2016 Nov 21;26(22):3026-3032</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">27773568</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>New Phytol. 2018 Mar;217(4):1610-1624</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">29218850</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Annu Rev Plant Biol. 2018 Apr 29;69:417-435</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">29489397</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Genes (Basel). 2019 Jan 30;10(2):</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">30704153</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Genome Biol. 2014 May 23;15(5):305</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25001400</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
</PubmedData>
</pubmed>
<affiliations>
<list>
<country>
<li>Autriche</li>
<li>République populaire de Chine</li>
</country>
<region>
<li>Hubei</li>
<li>Pékin</li>
<li>Vienne (Autriche)</li>
</region>
<settlement>
<li>Pékin</li>
<li>Vienne (Autriche)</li>
<li>Wuhan</li>
</settlement>
<orgName>
<li>Université de Pékin</li>
</orgName>
</list>
<tree>
<country name="République populaire de Chine">
<noRegion>
<name sortKey="Huang, Xing" sort="Huang, Xing" uniqKey="Huang X" first="Xing" last="Huang">Xing Huang</name>
</noRegion>
<name sortKey="Bai, Xuehui" sort="Bai, Xuehui" uniqKey="Bai X" first="Xuehui" last="Bai">Xuehui Bai</name>
<name sortKey="Du, Dengxiang" sort="Du, Dengxiang" uniqKey="Du D" first="Dengxiang" last="Du">Dengxiang Du</name>
<name sortKey="Gbokie, Thomas" sort="Gbokie, Thomas" uniqKey="Gbokie T" first="Thomas" last="Gbokie">Thomas Gbokie</name>
<name sortKey="Guo, Tieying" sort="Guo, Tieying" uniqKey="Guo T" first="Tieying" last="Guo">Tieying Guo</name>
<name sortKey="He, Chunping" sort="He, Chunping" uniqKey="He C" first="Chunping" last="He">Chunping He</name>
<name sortKey="He, Chunping" sort="He, Chunping" uniqKey="He C" first="Chunping" last="He">Chunping He</name>
<name sortKey="He, Chunping" sort="He, Chunping" uniqKey="He C" first="Chunping" last="He">Chunping He</name>
<name sortKey="Huang, Xing" sort="Huang, Xing" uniqKey="Huang X" first="Xing" last="Huang">Xing Huang</name>
<name sortKey="Huang, Xing" sort="Huang, Xing" uniqKey="Huang X" first="Xing" last="Huang">Xing Huang</name>
<name sortKey="Lu, Ying" sort="Lu, Ying" uniqKey="Lu Y" first="Ying" last="Lu">Ying Lu</name>
<name sortKey="Lu, Ying" sort="Lu, Ying" uniqKey="Lu Y" first="Ying" last="Lu">Ying Lu</name>
<name sortKey="Lu, Ying" sort="Lu, Ying" uniqKey="Lu Y" first="Ying" last="Lu">Ying Lu</name>
<name sortKey="Wu, Weihuai" sort="Wu, Weihuai" uniqKey="Wu W" first="Weihuai" last="Wu">Weihuai Wu</name>
<name sortKey="Wu, Weihuai" sort="Wu, Weihuai" uniqKey="Wu W" first="Weihuai" last="Wu">Weihuai Wu</name>
<name sortKey="Wu, Weihuai" sort="Wu, Weihuai" uniqKey="Wu W" first="Weihuai" last="Wu">Weihuai Wu</name>
<name sortKey="Xie, Zhouli" sort="Xie, Zhouli" uniqKey="Xie Z" first="Zhouli" last="Xie">Zhouli Xie</name>
<name sortKey="Yi, Kexian" sort="Yi, Kexian" uniqKey="Yi K" first="Kexian" last="Yi">Kexian Yi</name>
<name sortKey="Yi, Kexian" sort="Yi, Kexian" uniqKey="Yi K" first="Kexian" last="Yi">Kexian Yi</name>
<name sortKey="Yi, Kexian" sort="Yi, Kexian" uniqKey="Yi K" first="Kexian" last="Yi">Kexian Yi</name>
<name sortKey="Zhang, Zhirun" sort="Zhang, Zhirun" uniqKey="Zhang Z" first="Zhirun" last="Zhang">Zhirun Zhang</name>
</country>
<country name="Autriche">
<region name="Vienne (Autriche)">
<name sortKey="Laimer, Margit" sort="Laimer, Margit" uniqKey="Laimer M" first="Margit" last="Laimer">Margit Laimer</name>
</region>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Bois/explor/RustFungiGenomicsV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000033 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000033 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Bois
   |area=    RustFungiGenomicsV1
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     pubmed:32825074
   |texte=   Genome-Wide Analysis of the PIN Auxin Efflux Carrier Gene Family in Coffee.
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i   -Sk "pubmed:32825074" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd   \
       | NlmPubMed2Wicri -a RustFungiGenomicsV1 

Wicri

This area was generated with Dilib version V0.6.38.
Data generation: Fri Nov 20 18:06:51 2020. Site generation: Fri Nov 20 18:08:25 2020